Yeah gentoo has config protection on all files in /etc/. If a package has a new config file that's different to the current one the new file is renamed in a predictable way. You can then run etc-update which will look for these renamed files and help you update your current config files (if necessary), overwrite you current files, or just delete the update.
BTW the directories to be protected are defined by the CONFIG_PROTECT environment variable and you can exclude directories (i.e. new install and don't care about configs or you never alter the configs) using CONFIG_PROTECT_MASK.
BTW the directories to be protected are defined by the CONFIG_PROTECT environment variable and you can exclude directories (i.e. new install and don't care about configs or you never alter the configs) using CONFIG_PROTECT_MASK.





Think positive! Both upgrades in a single down-time. 2 birds with one stone! 
